Scientific Sense ® by Gill Eapen: Prof Trey Ideker is Professor of Medicine, Bioengineering and Computer Science at the University of California, San Diego. He directs the National Resource for Network Biology, and the Cancer Cell Map and Psychiatric Cell Map Initiatives.
A multi-scale map of cell structure fusing protein images and interactions. Nature. 2021 Nov 24. doi: 10.1038/s41586-021-04115 “We Might Not Know Half of What’s in Our Cells, New AI Technique Reveals Interpretation of cancer mutations using a multiscale map of protein systems. Science. 2021 A protein network map of head and neck cancer reveals PIK3CA mutant drug sensitivity. A protein interaction landscape of breast cancer. Science. 2021 Oct;374(6563):eabf3066 “Studies Delve Deep into the Protein Machinery of Cancer Cells.” NCI (4 Nov 2021) “From COVID to cancer, gene-mapping tool could ‘revolutionize’ treatment“. SF Chronicle (2 Oc “Moonshot Project Aims to Understand and Beat Cancer Using Protein Maps“. Singularity Hub (5 Oct 2021) “Looking Beyond DNA to See Cancer with New Clarity,” Predicting Drug Response and Synergy Using a Deep Learning Model of Human Cancer Cells. Cancer Cell (2020), https://doi.org/10.1016/j.ccell.2020.09.014. PMID: 33096023. [PDF] [PubMed] Related Press: UCSD Health, AZoLifeSciences, Med India, Health IT Analytics and ScienceDaily. Quantitative Translation of Dog-to-Human Aging by Conserved Remodeling of the DNA Methylome. Cell Systems. 2020 Aug 26;11(2):176-185.e6. doi: 10.1016/j.cels.2020.06.006. Epub 2020 Jul 2. PMID: 32619550 [PDF] [PubMed] *Cover Article Related Press: Here’s a better way to convert dog years to human years, scientists say. Science Magazine (15 Nov 2019). See also: Scientific American, BBC, NPR, Washington Post, Discover Magazine, Smithsonian, New York Post, (and more) Identifying Epistasis in Cancer Genomes: A Delicate Affair. Cell. 2019 May 30;177(6):1375-1383. doi: 10.1016/j.cell.2019.05.005. Review. PMID: 31150618 [PDF] [PubMed] Using deep learning to model the hierarchical structure and function of a cell.* Nat Methods. 2018 Mar 5. doi: 10.1038/nmeth.4627. PMID: 29505029 [PDF] [PubMed] [Cover Art] *Cover article Please subscribe to this channel: https://www.youtube.com/c/ScientificSense?sub_confirmation=1
--- Support this podcast: https://podcasters.spotify.com/pod/show/scientificsense/supportProf. Michel Janssen, Professor of Physics and Astronomy, University of Minnesota
Prof. Gary An, Professor of Surgery at the University of Vermont
Prof. Scott Dodelson, Professor of Physics at Carnegie Melon University
Prof. Jean Camp, Professor of Informatics and Computing at Indiana University
Prof. David Linden, Professor of Neuroscience at the Johns Hopkins University School of Medicine
Prof. Stephen Stearns, Professor of Ecology and Evolutionary Biology at Yale University.
Prof. Jason Wright, Professor of Astrophysics at Penn State University
Prof. Jeff Prince, Professor of Public Policy at Indiana University
Prof. Carol Christine Fair, Professor of Security Studies at Georgetown University
Prof. Michael Strauss, Professor of Astrophysics at Princeton University
Prof. Nathan Gianneschi, Professor of Materials Science at Northwestern University
Prof. David Uttal, Professor of Education and of Psychology at Northwestern University
Prof. Jenny Greene, Professor of Astrophysics at Princeton University
Dr. Gaurav Jain, Assistant Professor of Marketing at the Rensselaer Polytechnic Institute
Election Special: Dr. Dipayan Gosh of Harvard Kennedy School and Dr. Heidi Tworek of University of British Columbia
Dr. Michael Niemack, Associate Professor of Astronomy at Cornell University
Prof. Josh Frieman, Professor of Astrophysics at the University of Chicago
Prof. Mario Macis, Professor of economics at Johns Hopkins University
Prof. John Flood, Professor of Law and Society at Griffith University, Brisbane, Australia.
Dr. Mark Hoffman, Research Professor at the University of Missouri, Kansas City
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